However, the fundamental difference is that in a mixed ANOVA, the subjects that undergo each condition (e.g., a control and treatment) are different, whereas in a two-way repeated measures ANOVA, the subjects undergo both conditions (e.g., they undergo the control and the treatment).A two-way repeated measures ANOVA is often used in studies where you have measured a dependent variable over two or more time points, or when subjects have undergone two or more conditions (i.e., the two factors are time and conditions).The primary purpose of a two-way repeated measures ANOVA is to understand if there is an interaction between these two factors on the dependent variable.The researcher wants to find out whether one of two different treatments is more effective at reducing pain levels.
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